Dear All,
we are transfereing our file system - I have copied over my project but when I try and import I get the following error:
Unable to import project from /beegfs/scratchfs/mccarthy_cryosparc_grp/mbowler/P98: Expecting value: line 1 column 1 (char 0)
The project directories are imported from the json files but otherwise nothing is there. Any help appreciated! Best wishes, Matt
Dear Matt,
could you first of all post the content of P98 folder and maybe few job subfolders like J10 and so on, produced by ls command. Are you sure that everything was copied? Did you use rsync for instance, and with which parameter?
Best,
Vladimir
Hi Vladimir,
thanks for the reply - yes I used rsync (rsync -rtv P98 /nfs/emblem/mccarthy_cryosparc_grp/mbowler/P98) below is the result of the ls:
exports J112 J1243 J1366 J1489 J1610 J1733 J276 J399 J520 J643 J766 J889
import_project_logs.txt J1120 J1244 J1367 J149 J1611 J1734 J277 J4 J521 J644 J767 J89
J1 J1122 J1245 J1368 J1490 J1612 J1735 J278 J40 J522 J645 J768 J890
J10 J1123 J1246 J1369 J1491 J1613 J1736 J279 J400 J523 J646 J769 J891
J100 J1124 J1247 J137 J1492 J1614 J1737 J28 J401 J524 J647 J77 J892
J1000 J1125 J1248 J1370 J1493 J1615 J1738 J280 J402 J525 J648 J770 J893
J1001 J1126 J1249 J1371 J1494 J1616 J1739 J281 J403 J526 J649 J771 J894
J1002 J1127 J125 J1372 J1495 J1617 J174 J282 J404 J527 J65 J772 J895
J1003 J1128 J1250 J1373 J1496 J1618 J1740 J283 J405 J528 J650 J773 J896
J1004 J1129 J1251 J1374 J1497 J1619 J1741 J284 J406 J529 J651 J774 J897
J1005 J113 J1252 J1375 J1498 J162 J1742 J285 J407 J53 J652 J775 J898
J1006 J1130 J1253 J1376 J1499 J1620 J1743 J286 J408 J530 J653 J776 J899
J1007 J1131 J1254 J1377 J15 J1621 J1744 J287 J409 J531 J654 J777 J9
J1008 J1132 J1255 J1378 J150 J1622 J1745 J288 J41 J532 J655 J778 J90
J1009 J1133 J1256 J1379 J1500 J1623 J1746 J289 J410 J533 J656 J779 J900
J101 J1134 J1257 J138 J1501 J1624 J1747 J29 J411 J534 J657 J78 J901
J1010 J1135 J1258 J1380 J1502 J1625 J1748 J290 J412 J535 J658 J780 J902
J1011 J1136 J1259 J1381 J1503 J1626 J1749 J291 J413 J536 J659 J781 J903
J1012 J1137 J126 J1382 J1504 J1627 J175 J292 J414 J537 J66 J782 J904
J1013 J1138 J1260 J1383 J1505 J1628 J1750 J293 J415 J538 J660 J783 J905
J1014 J1139 J1261 J1384 J1506 J1629 J1751 J294 J416 J539 J661 J784 J906
J1015 J114 J1262 J1385 J1507 J163 J1752 J295 J417 J54 J662 J785 J907
J1016 J1140 J1263 J1386 J1508 J1630 J1753 J296 J418 J540 J663 J786 J908
J1017 J1141 J1264 J1387 J1509 J1631 J1754 J297 J419 J541 J664 J787 J909
J1018 J1142 J1265 J1388 J151 J1632 J1755 J298 J42 J542 J665 J788 J91
J1019 J1143 J1266 J1389 J1510 J1633 J176 J299 J420 J543 J666 J789 J910
J102 J1144 J1267 J139 J1511 J1634 J177 J3 J421 J544 J667 J79 J911
J1020 J1145 J1268 J1390 J1512 J1635 J178 J30 J422 J545 J668 J790 J912
J1021 J1146 J1269 J1391 J1513 J1636 J179 J300 J423 J546 J669 J791 J913
J1022 J1147 J127 J1392 J1514 J1637 J18 J301 J424 J547 J67 J792 J914
J1023 J1148 J1270 J1393 J1515 J1638 J180 J302 J425 J548 J670 J793 J915
J1024 J1149 J1271 J1394 J1516 J1639 J181 J303 J426 J549 J671 J794 J916
J1025 J115 J1272 J1395 J1517 J164 J182 J304 J427 J55 J672 J795 J917
J1026 J1150 J1273 J1396 J1518 J1640 J183 J305 J428 J550 J673 J796 J918
J1027 J1151 J1274 J1397 J1519 J1641 J184 J306 J429 J551 J674 J797 J919
J1029 J1152 J1275 J1398 J152 J1642 J185 J307 J43 J552 J675 J798 J92
J103 J1153 J1276 J1399 J1520 J1643 J186 J308 J430 J553 J676 J799 J920
J1030 J1154 J1277 J14 J1521 J1644 J187 J309 J431 J554 J677 J8 J921
J1031 J1155 J1278 J140 J1522 J1645 J188 J31 J432 J555 J678 J80 J922
J1032 J1156 J1279 J1400 J1523 J1646 J189 J310 J433 J556 J679 J800 J923
J1033 J1157 J128 J1401 J1524 J1647 J19 J311 J434 J557 J68 J801 J924
J1034 J1158 J1280 J1402 J1525 J1648 J190 J312 J435 J558 J680 J802 J925
J1035 J1159 J1281 J1403 J1526 J1649 J191 J313 J436 J559 J681 J803 J926
J1036 J116 J1282 J1404 J1527 J165 J192 J314 J437 J56 J682 J804 J927
J1037 J1160 J1283 J1405 J1528 J1650 J193 J315 J438 J560 J683 J805 J928
J1038 J1161 J1284 J1406 J1529 J1651 J194 J316 J439 J561 J684 J806 J929
J1039 J1162 J1285 J1407 J153 J1652 J195 J317 J44 J562 J685 J807 J93
J104 J1163 J1286 J1408 J1530 J1653 J196 J318 J440 J563 J686 J808 J930
J1040 J1164 J1287 J1409 J1531 J1654 J197 J319 J441 J564 J687 J809 J931
J1041 J1165 J1288 J141 J1532 J1655 J198 J32 J442 J565 J688 J81 J932
J1042 J1166 J1289 J1410 J1533 J1656 J199 J320 J443 J566 J689 J810 J933
J1043 J1167 J129 J1411 J1534 J1657 J2 J321 J444 J567 J69 J811 J934
J1044 J1168 J1290 J1412 J1535 J1658 J20 J322 J445 J568 J690 J812 J935
J1045 J1169 J1291 J1413 J1536 J1659 J200 J323 J446 J569 J691 J813 J936
J1046 J117 J1292 J1414 J1537 J166 J201 J324 J447 J57 J692 J814 J937
J1047 J1170 J1293 J1415 J1538 J1660 J202 J325 J448 J570 J693 J815 J938
J1048 J1171 J1294 J1416 J1539 J1661 J203 J326 J449 J571 J694 J816 J939
J1049 J1172 J1295 J1417 J154 J1662 J204 J327 J45 J572 J695 J817 J94
J105 J1173 J1296 J1418 J1540 J1663 J205 J328 J450 J573 J696 J818 J940
J1050 J1174 J1297 J1419 J1541 J1664 J206 J329 J451 J574 J697 J819 J941
J1051 J1175 J1298 J142 J1542 J1665 J207 J33 J452 J575 J698 J82 J942
J1052 J1176 J1299 J1420 J1543 J1666 J208 J330 J453 J576 J699 J820 J943
J1053 J1177 J13 J1421 J1544 J1667 J209 J331 J454 J577 J7 J821 J944
J1054 J1178 J130 J1422 J1545 J1668 J21 J332 J455 J578 J70 J822 J945
J1055 J1179 J1300 J1423 J1546 J1669 J210 J333 J456 J579 J700 J823 J946
J1056 J118 J1301 J1424 J1547 J167 J211 J334 J457 J58 J701 J824 J947
J1057 J1180 J1302 J1425 J1548 J1670 J212 J335 J458 J580 J702 J825 J948
J1058 J1181 J1303 J1426 J1549 J1671 J213 J336 J459 J581 J703 J826 J949
J1059 J1182 J1304 J1427 J155 J1672 J214 J337 J46 J582 J704 J827 J95
J106 J1183 J1305 J1428 J1550 J1673 J215 J338 J460 J583 J705 J828 J950
J1060 J1184 J1306 J1429 J1551 J1674 J216 J339 J461 J584 J706 J829 J951
J1061 J1185 J1307 J143 J1552 J1675 J217 J34 J462 J585 J707 J83 J952
J1062 J1186 J1308 J1430 J1553 J1676 J218 J340 J463 J586 J708 J830 J953
J1063 J1187 J1309 J1431 J1554 J1677 J219 J341 J464 J587 J709 J831 J954
J1064 J1188 J131 J1432 J1555 J1678 J22 J342 J465 J588 J71 J832 J955
J1065 J1189 J1310 J1433 J1556 J1679 J220 J343 J466 J589 J710 J833 J956
J1066 J119 J1311 J1434 J1557 J168 J221 J344 J467 J59 J711 J834 J957
J1067 J1190 J1312 J1435 J1558 J1680 J222 J345 J468 J590 J712 J835 J958
J1068 J1191 J1313 J1436 J1559 J1681 J223 J346 J469 J591 J713 J836 J959
J1069 J1192 J1314 J1437 J156 J1682 J224 J347 J47 J592 J714 J837 J96
J107 J1193 J1315 J1438 J1560 J1683 J225 J348 J470 J593 J715 J838 J960
J1070 J1194 J1316 J1439 J1561 J1684 J226 J349 J471 J594 J716 J839 J961
J1071 J1195 J1317 J144 J1562 J1685 J227 J35 J472 J595 J717 J84 J962
J1072 J1196 J1318 J1440 J1563 J1686 J228 J350 J473 J596 J718 J840 J963
J1073 J1197 J1319 J1441 J1564 J1687 J229 J351 J474 J597 J719 J841 J964
J1074 J1198 J132 J1442 J1565 J1688 J23 J352 J475 J598 J72 J842 J965
J1075 J1199 J1320 J1443 J1566 J1689 J230 J353 J476 J599 J720 J843 J966
J1076 J12 J1321 J1444 J1567 J169 J231 J354 J477 J6 J721 J844 J967
J1077 J120 J1322 J1445 J1568 J1690 J232 J355 J478 J60 J722 J845 J968
J1078 J1200 J1323 J1446 J1569 J1691 J233 J356 J479 J600 J723 J846 J969
J1079 J1201 J1324 J1447 J157 J1692 J234 J357 J48 J601 J724 J847 J97
J108 J1202 J1325 J1448 J1570 J1693 J235 J358 J480 J602 J725 J848 J970
J1080 J1203 J1326 J1449 J1571 J1694 J236 J359 J481 J603 J726 J849 J971
J1081 J1204 J1327 J145 J1572 J1695 J237 J36 J482 J604 J727 J85 J972
J1082 J1205 J1328 J1450 J1573 J1696 J238 J360 J483 J605 J728 J850 J973
J1083 J1206 J1329 J1451 J1574 J1697 J239 J361 J484 J606 J729 J851 J974
J1084 J1207 J133 J1452 J1575 J1698 J24 J362 J485 J607 J73 J852 J975
J1085 J1208 J1330 J1453 J1576 J1699 J240 J363 J486 J608 J730 J853 J976
J1086 J1209 J1331 J1454 J1577 J17 J241 J364 J487 J609 J731 J854 J977
J1087 J121 J1332 J1455 J1578 J170 J242 J365 J488 J61 J732 J855 J978
J1088 J1210 J1333 J1456 J1579 J1700 J243 J366 J489 J610 J733 J856 J979
J1089 J1211 J1334 J1457 J158 J1701 J244 J367 J49 J611 J734 J857 J98
J109 J1212 J1335 J1458 J1580 J1702 J245 J368 J490 J612 J735 J858 J980
J1090 J1213 J1336 J1459 J1581 J1703 J246 J369 J491 J613 J736 J859 J981
J1091 J1214 J1337 J146 J1582 J1704 J247 J37 J492 J614 J737 J86 J982
J1092 J1215 J1338 J1460 J1583 J1705 J248 J370 J493 J615 J738 J860 J983
J1093 J1216 J1339 J1461 J1584 J1706 J249 J371 J494 J616 J739 J861 J984
J1094 J1217 J134 J1462 J1585 J1707 J25 J372 J495 J617 J74 J862 J985
J1095 J1218 J1340 J1463 J1586 J1708 J250 J373 J496 J618 J740 J863 J986
J1096 J1219 J1341 J1464 J1587 J1709 J251 J374 J497 J619 J741 J864 J987
J1097 J122 J1342 J1465 J1588 J171 J252 J375 J498 J62 J742 J865 J988
J1098 J1220 J1343 J1466 J1589 J1710 J253 J376 J499 J620 J743 J866 J989
J1099 J1221 J1344 J1467 J159 J1711 J254 J377 J5 J621 J744 J867 J99
J11 J1222 J1345 J1468 J1590 J1712 J255 J378 J50 J622 J745 J868 J990
J110 J1223 J1346 J1469 J1591 J1713 J256 J379 J500 J623 J746 J869 J991
J1100 J1224 J1347 J147 J1592 J1714 J257 J38 J501 J624 J747 J87 J992
J1101 J1225 J1348 J1470 J1593 J1715 J258 J380 J502 J625 J748 J870 J993
J1102 J1226 J1349 J1471 J1594 J1716 J259 J381 J503 J626 J749 J871 J994
J1103 J1227 J135 J1472 J1595 J1717 J26 J382 J504 J627 J75 J872 J995
J1104 J1228 J1350 J1473 J1596 J1718 J260 J383 J505 J628 J750 J873 J996
J1105 J1229 J1351 J1474 J1597 J1719 J261 J384 J506 J629 J751 J874 J997
J1106 J123 J1352 J1475 J1598 J172 J262 J385 J507 J63 J752 J875 J998
J1107 J1230 J1353 J1476 J1599 J1720 J263 J386 J508 J630 J753 J876 J999
J1108 J1231 J1354 J1477 J16 J1721 J264 J387 J509 J631 J754 J877 job_manifest.json
J1109 J1232 J1355 J1478 J160 J1722 J265 J388 J51 J632 J755 J878 P325
J111 J1233 J1356 J1479 J1600 J1723 J266 J389 J510 J633 J756 J879 P327
J1110 J1234 J1357 J148 J1601 J1724 J267 J39 J511 J634 J757 J88 project.json
J1111 J1235 J1358 J1480 J1602 J1725 J268 J390 J512 J635 J758 J880 workspaces.json
J1112 J1236 J1359 J1481 J1603 J1726 J269 J391 J513 J636 J759 J881
J1113 J1237 J136 J1482 J1604 J1727 J27 J392 J514 J637 J76 J882
J1114 J1238 J1360 J1483 J1605 J1728 J270 J393 J515 J638 J760 J883
J1115 J1239 J1361 J1484 J1606 J1729 J271 J394 J516 J639 J761 J884
J1116 J124 J1362 J1485 J1607 J173 J272 J395 J517 J64 J762 J885
J1117 J1240 J1363 J1486 J1608 J1730 J273 J396 J518 J640 J763 J886
J1118 J1241 J1364 J1487 J1609 J1731 J274 J397 J519 J641 J764 J887
J1119 J1242 J1365 J1488 J161 J1732 J275 J398 J52 J642 J765 J888
I was wondering if problem could be in symbolic links. You haven’t used option rsync -l, to copy symbolyc links. Check the page here:
https://guide.cryosparc.com/processing-data/tutorials-and-case-studies/tutorial-migrating-your-cryosparc-instance
So I recopied with symbolic links and still get the same error - I looked at the instructions in the tutorial but will have to get theh sys admin people to do it I suspect as I do not have permissions needed. Many thanks for your help.
The only other thing which may help, is to look at your project.json file. I am not sure if changing the path to project there will help? Are you migrating project from the same cryosparc version?