Problems with 3.1 upgrade

Install, Configure and Update
3

Hi @adesfosses, it looks like the dependencies failed to install due to a permission issue. Please try completing the update with the following instructions (for each step, substitute /path/to/ to the file path of the cryoSPARC installation on your system)

  1. Via command line, navigate to the cryosparc2_master directory, e.g.

    cd /path/to/cryosparc2_master

  2. Force-reinstall the dependencies:

    bin/cryosparcm forcedeps

    If you see any errors, send me the resulting outputs

  3. Copy or upload the cryosparc2_worker.tar.gz worker update into the cryoSPARC worker module directory, e.g.,

    cp cryosparc2_worker.tar.gz /path/to/cryosparc2_worker

  4. Navigate to the cryosparc2_worker directory via command line, e.g.,

    cd /path/to/cryosparc2_worker

  5. Complete the worker update

    bin/cryosparcw update

  6. Start cryoSPARC as you normally would

    cryosparcm start

Send me any errors you see. Also check out this post for some advice on updates from v2 to v3: cryoSPARC v2 → v3 Update Issues

If you still encounter issues, I suggest backing up your database, deleting your cryosparc2_master and cryosparc2_worker folders, and doing a fresh installation via instructions here: https://guide.cryosparc.com/setup-configuration-and-management/how-to-download-install-and-configure/downloading-and-installing-cryosparc (use the same --dbpath flag as when you first installed cryoSPARC, e.g., $HOME/cryosparc/cryosparc2_database)

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