Integrating particle subtraction directly into the local refinement job could simplify subraction-refinement workflows significantly. A simple toggle to apply the focus mask inverted to subtract the background signal, and run refinement in one step would remove the need for intermediate jobs.
Additionally, an option to automatically center the map and mask within the refinement box would be highly useful, as recentering often improves results while currently requiring manual effort.
These small additions could make local refinement faster, cleaner, and more user-friendly.
Thanks!