Microgpraph denoiser

Particle Picking
1

Dear colleagues,

I am running Micrograph denoiser.
Then, I pick the particle from the denoised movies.

But when I want to extract them, I get the following error.

Traceback (most recent call last):
File “cryosparc_master/cryosparc_compute/run.py”, line 115, in cryosparc_master.cryosparc_compute.run.main
File “/home/cryosparc_user/cryosparc/cryosparc_worker/cryosparc_compute/jobs/extract/run.py”, line 353, in run_extract_micrographs_multi
assert particles_dset is not None, ‘Could not load particles input group’
AssertionError: Could not load particles input group

Any ideas?

Thank you

Kind regards,
Dmitry

2

Hi @Dmitry.
Please can you post the output of this command, substituting the actual project and job UIDs of the failed Extract job:

cryosparcm cli "get_job('P912', 'J934', 'version', 'job_type', 'input_slot_groups')"
1 Like
3

Hello @wtempel , I’m not sure what caused those inconsistencies - I rebooted the system, and now it works.
My concern was that particle extraction complained about the absence of a corrected input connection. Which was not the case.

So maybe, in my specific case, the issue was in a load of a workstation.

Sincerely,
Dmitry