@wtempel, Here you go. If you need a different snapshot, please let me know.
Michael
cryosparcm cli “get_job(‘$csprojectid’, ‘$csjobid’, ‘job_type’, ‘version’, ‘instance_information’, ‘status’, ‘params_spec’, ‘errors_run’, ‘input_slot_groups’)”
{‘_id’: ‘67bf3cf3a2ce6c8593969c7d’, ‘errors_run’: [{‘message’: ‘No output result match for particles.blob in job J118’, ‘warning’: True}, {‘message’: ‘No output result match for particles.alignments2D in job J118’, ‘warning’: True}, {‘message’: ‘No output result match for particles.location in job J118’, ‘warning’: True}, {‘message’: ‘No output result match for particles.pick_stats in job J118’, ‘warning’: True}, {‘message’: ‘No output result match for particles.sym_expand in job J118’, ‘warning’: True}, {‘message’: ‘Result blob had the wrong length (0, should be 4558200). Note that outputs are still usable.’, ‘warning’: False}], ‘input_slot_groups’: [{‘connections’: [{‘group_name’: ‘particles’, ‘job_uid’: ‘J103’, ‘slots’: [{‘group_name’: ‘particles’, ‘job_uid’: ‘J103’, ‘result_name’: ‘blob’, ‘result_type’: ‘particle.blob’, ‘slot_name’: ‘blob’, ‘version’: ‘F’}, {‘group_name’: ‘particles’, ‘job_uid’: ‘J103’, ‘result_name’: ‘ctf’, ‘result_type’: ‘particle.ctf’, ‘slot_name’: ‘ctf’, ‘version’: ‘F’}, {‘group_name’: ‘particles’, ‘job_uid’: ‘J103’, ‘result_name’: ‘alignments3D’, ‘result_type’: ‘particle.alignments3D’, ‘slot_name’: ‘alignments3D’, ‘version’: ‘F’}, {‘group_name’: ‘particles’, ‘job_uid’: ‘J103’, ‘result_name’: ‘alignments2D’, ‘result_type’: ‘particle.alignments2D’, ‘slot_name’: None, ‘version’: ‘F’}, {‘group_name’: ‘particles’, ‘job_uid’: ‘J103’, ‘result_name’: ‘location’, ‘result_type’: ‘particle.location’, ‘slot_name’: None, ‘version’: ‘F’}, {‘group_name’: ‘particles’, ‘job_uid’: ‘J103’, ‘result_name’: ‘pick_stats’, ‘result_type’: ‘particle.pick_stats’, ‘slot_name’: None, ‘version’: ‘F’}, {‘group_name’: ‘particles’, ‘job_uid’: ‘J103’, ‘result_name’: ‘sym_expand’, ‘result_type’: ‘particle.sym_expand’, ‘slot_name’: None, ‘version’: ‘F’}]}], ‘count_max’: inf, ‘count_min’: 1, ‘description’: ‘Particle stacks to use. Multiple stacks will be concatenated.’, ‘name’: ‘particles’, ‘repeat_allowed’: False, ‘slots’: [{‘description’: ‘’, ‘name’: ‘blob’, ‘optional’: False, ‘title’: ‘Particle data blobs’, ‘type’: ‘particle.blob’}, {‘description’: ‘’, ‘name’: ‘ctf’, ‘optional’: False, ‘title’: ‘Particle ctf parameters’, ‘type’: ‘particle.ctf’}, {‘description’: ‘’, ‘name’: ‘alignments3D’, ‘optional’: False, ‘title’: ‘Particle 3D alignments’, ‘type’: ‘particle.alignments3D’}], ‘title’: ‘Particle stacks’, ‘type’: ‘particle’}, {‘connections’: [{‘group_name’: ‘volume’, ‘job_uid’: ‘J115’, ‘slots’: [{‘group_name’: ‘volume’, ‘job_uid’: ‘J115’, ‘result_name’: ‘map’, ‘result_type’: ‘volume.blob’, ‘slot_name’: ‘map’, ‘version’: ‘F’}]}], ‘count_max’: 1, ‘count_min’: 1, ‘description’: ‘’, ‘name’: ‘volume’, ‘repeat_allowed’: False, ‘slots’: [{‘description’: ‘’, ‘name’: ‘map’, ‘optional’: False, ‘title’: ‘Initial volume raw data’, ‘type’: ‘volume.blob’}], ‘title’: ‘Initial volume’, ‘type’: ‘volume’}, {‘connections’: [{‘group_name’: ‘mask’, ‘job_uid’: ‘J116’, ‘slots’: [{‘group_name’: ‘mask’, ‘job_uid’: ‘J116’, ‘result_name’: ‘mask’, ‘result_type’: ‘volume.blob’, ‘slot_name’: ‘mask’, ‘version’: ‘F’}]}], ‘count_max’: 1, ‘count_min’: 1, ‘description’: ‘’, ‘name’: ‘mask’, ‘repeat_allowed’: False, ‘slots’: [{‘description’: ‘’, ‘name’: ‘mask’, ‘optional’: False, ‘title’: ‘Static mask’, ‘type’: ‘volume.blob’}], ‘title’: ‘Static mask’, ‘type’: ‘mask’}], ‘instance_information’: {‘CUDA_version’: ‘11.8’, ‘available_memory’: ‘249.75GB’, ‘cpu_model’: ‘Intel(R) Xeon(R) Silver 4210 CPU @ 2.20GHz’, ‘driver_version’: ‘12.4’, ‘gpu_info’: [{‘id’: 0, ‘mem’: 11539054592, ‘name’: ‘NVIDIA GeForce RTX 2080 Ti’, ‘pcie’: ‘0000:18:00’}, {‘id’: 1, ‘mem’: 11539054592, ‘name’: ‘NVIDIA GeForce RTX 2080 Ti’, ‘pcie’: ‘0000:3b:00’}, {‘id’: 2, ‘mem’: 11539054592, ‘name’: ‘NVIDIA GeForce RTX 2080 Ti’, ‘pcie’: ‘0000:86:00’}, {‘id’: 3, ‘mem’: 11539054592, ‘name’: ‘NVIDIA GeForce RTX 2080 Ti’, ‘pcie’: ‘0000:af:00’}], ‘ofd_hard_limit’: 262144, ‘ofd_soft_limit’: 1024, ‘physical_cores’: 20, ‘platform_architecture’: ‘x86_64’, ‘platform_node’: ‘gimli.utmb.edu’, ‘platform_release’: ‘6.12.11-1.el8.elrepo.x86_64’, ‘platform_version’: ‘#1 SMP PREEMPT_DYNAMIC Thu Jan 23 17:59:11 EST 2025’, ‘total_memory’: ‘376.57GB’, ‘used_memory’: ‘119.28GB’}, ‘job_type’: ‘new_local_refine’, ‘params_spec’: {‘refine_res_init’: {‘value’: 10}, ‘use_alignment_prior’: {‘value’: True}}, ‘project_uid’: ‘P305’, ‘status’: ‘failed’, ‘uid’: ‘J118’, ‘version’: ‘v4.6.2’}
cryosparcm eventlog $csprojectid $csjobid | tail -n 40
[Thu, 27 Feb 2025 12:40:42 GMT] Fourier Space Slices Iteration 009
[Thu, 27 Feb 2025 12:40:43 GMT] Real Space Mask Slices Iteration 009
[Thu, 27 Feb 2025 12:40:43 GMT] FSC Iteration 009
[Thu, 27 Feb 2025 12:40:44 GMT] FSC Iteration 009, after FSC-mask auto-tightening
[Thu, 27 Feb 2025 12:40:44 GMT] cFSCs (Half-angle: 20°) Iteration 009, with autotight mask
[Thu, 27 Feb 2025 12:40:46 GMT] Guinier Plot Iteration 009
[Thu, 27 Feb 2025 12:40:46 GMT] Noise Model Iteration 009
[Thu, 27 Feb 2025 12:40:56 GMT] Viewing Direction Distribution Iteration 009
[Thu, 27 Feb 2025 12:40:57 GMT] Posterior Precision Directional Distribution Iteration 009
[Thu, 27 Feb 2025 12:41:46 GMT] Magnitudes of alignment changes Iteration 009
[Thu, 27 Feb 2025 12:41:59 GMT] Per particle scale factors 009
[Thu, 27 Feb 2025 12:41:59 GMT] [CPU RAM used: 14929 MB] Done in 80.465s.
[Thu, 27 Feb 2025 12:41:59 GMT] [CPU RAM used: 14929 MB] Outputting files…
[Thu, 27 Feb 2025 12:42:26 GMT] [CPU RAM used: 14883 MB] Done in 26.215s.
[Thu, 27 Feb 2025 12:42:26 GMT] [CPU RAM used: 14883 MB] Done iteration 9 in 8578.650s. Total time so far 73574.205s
[Thu, 27 Feb 2025 12:42:26 GMT] [CPU RAM used: 14883 MB] ====== Done Refinement ======
[Thu, 27 Feb 2025 12:42:26 GMT] [CPU RAM used: 14883 MB] Note that the output structure from refinement has been
lowpass filtered to the gold-standard FSC resolution estimated
above. However, the structure probably needs sharpening in
order to best visualize high resolution features. This can be
done with the Sharpening task (as a new experiment).
[Thu, 27 Feb 2025 12:42:26 GMT] [CPU RAM used: 14883 MB] Full run took 73574.906s
[Thu, 27 Feb 2025 12:42:27 GMT] [CPU RAM used: 9773 MB] --------------------------------------------------------------
[Thu, 27 Feb 2025 12:42:27 GMT] [CPU RAM used: 9773 MB] Compiling job outputs…
[Thu, 27 Feb 2025 12:42:27 GMT] [CPU RAM used: 9773 MB] Passing through outputs for output group particles from input group particles
[Thu, 27 Feb 2025 12:42:36 GMT] [CPU RAM used: 12122 MB] This job outputted results [‘alignments3D’, ‘ctf’]
[Thu, 27 Feb 2025 12:42:36 GMT] [CPU RAM used: 12122 MB] Loaded output dset with 4558200 items
[Thu, 27 Feb 2025 12:42:36 GMT] [CPU RAM used: 12122 MB] Passthrough results [‘blob’, ‘alignments2D’, ‘location’, ‘pick_stats’, ‘sym_expand’]
[Thu, 27 Feb 2025 12:42:36 GMT] [CPU RAM used: 12122 MB] No output result match for particles.blob in job J118
[Thu, 27 Feb 2025 12:42:36 GMT] [CPU RAM used: 12122 MB] No output result match for particles.alignments2D in job J118
[Thu, 27 Feb 2025 12:42:36 GMT] [CPU RAM used: 12122 MB] No output result match for particles.location in job J118
[Thu, 27 Feb 2025 12:42:36 GMT] [CPU RAM used: 12122 MB] No output result match for particles.pick_stats in job J118
[Thu, 27 Feb 2025 12:42:36 GMT] [CPU RAM used: 12122 MB] No output result match for particles.sym_expand in job J118
[Thu, 27 Feb 2025 12:42:36 GMT] [CPU RAM used: 12122 MB] Loaded passthrough dset with 0 items
[Thu, 27 Feb 2025 12:42:36 GMT] [CPU RAM used: 11026 MB] Checking outputs for output group particles
[Thu, 27 Feb 2025 12:42:39 GMT] [CPU RAM used: 12156 MB] Traceback (most recent call last):
File “cryosparc_master/cryosparc_compute/run.py”, line 134, in cryosparc_master.cryosparc_compute.run.main
File “/mnt/ape2/cryosparc/software/cryosparc/cryosparc_worker/cryosparc_compute/jobs/runcommon.py”, line 1243, in check_outputs
assert output_len == target_len, “Result %s had the wrong length (%d, should be %d). Note that outputs are still usable.” % (resname, output_len, target_len)
AssertionError: Result blob had the wrong length (0, should be 4558200). Note that outputs are still usable.
