Dear all,
we are running CS 4.2.1 on a cluster (SLURM) and we have a dataset where motion correction always fails at the same micrograph (error at the end of this post). It seems that it is corrupted and we will try to remove it from the batch.
What might be a bug is that the job doesn’t fail ‘gracefully’. I mean there is no outputs at all (even if we use Mark job as complete option. All the outuputs = 0.
I guess the intention is to keep failed movies in the Movies incomplete category? And the motion corrected particles as the output? Then we could use the incomplete group and continue from there (after removing the troublesome movie)? Am I on the right track?
Would be useful when processing 1000’s of movies.
Here is the error we get:
Traceback (most recent call last):? File "cryosparc_master/cryosparc_compute/run.py",
line 96, in cryosparc_compute.run.main? File
"cryosparc_master/cryosparc_compute/jobs/motioncorrection/run_local.py", line 400, in
cryosparc_compute.jobs.motioncorrection.run_local.run_local_motion_correction_multi?
File "<__array_function__ internals>", line 5, in concatenate?ValueError: all the input
array dimensions for the concatenation axis must match exactly, but along dimension 1,
the array at index 0 has size 40 and the array at index 1683 has size 41