Local filtering fail

open

#1

hi all,

Imported a stack from relion, did a refine, looks great. put hat volume into local resolution estimate and got good result. Took the volume from local resolution and loaded into local filter and get the error below. Thanks!

Traceback (most recent call last): 
File "cryosparc2_worker/cryosparc2_compute/run.py", line 69, in cryosparc2_compute.run.main 
File "cryosparc2_compute/jobs/jobregister.py", line 280, in get_run_function runmod = importlib.import_module(".."+modname, __name__) 
File "/home_local/cryosparc/cryosparc2_worker/deps/anaconda/lib/python2.7/importlib/__init__.py", line 37, in import_module __import__(name) 
File "cryosparc2_worker/cryosparc2_compute/jobs/local_filter/run.py", line 14, in init cryosparc2_compute.jobs.local_filter.run File "cryosparc2_compute/engine/__init__.py", line 8, in <module> from engine import * 
File "cryosparc2_worker/cryosparc2_compute/engine/engine.py", line 12, in init cryosparc2_compute.engine.engine File "cryosparc2_worker/cryosparc2_compute/engine/gfourier.py", line 6, in init cryosparc2_compute.engine.gfourier 
File "/home_local/cryosparc/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/skcuda/fft.py", line 19, in <module> from . import misc 
File "/home_local/cryosparc/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/skcuda/misc.py", line 38, in <module> from . import cusolver 
File "/home_local/cryosparc/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/skcuda/cusolver.py", line 290, in <module> _libcusolver.cusolverDnCreateSyevjInfo.restype = int File "/home_local/cryosparc/cryosparc2_worker/deps/anaconda/lib/python2.7/ctypes/__init__.py", line 379, in __getattr__ func = self.__getitem__(name) 
File "/home_local/cryosparc/cryosparc2_worker/deps/anaconda/lib/python2.7/ctypes/__init__.py", line 384, in __getitem__ func = self._FuncPtr((name_or_ordinal, self)) 
AttributeError: /opt/applications/cuda/8.0/lib64/libcusolver.so: undefined symbol: cusolverDnCreateSyevjInfo

#2

Hi @orangeboomerang,

What GPU/CUDA version/driver version are you running? And are you on cryoSPARC v2.5.0?
Another user had this issue and it was resolved by switching to CUDA 9.2.