Hi,
I have been running into an issue with inspect picks failing after running a filament tracer job using a template. I have tested the dataset and micrographs with running filament tracer without the templates and it runs fine. It seems that only certain templates used cause inspect picks to crash.
Does anyone have some insight on this? I haven’t been able to yet determine what qualities of the template allow for it to run properly.
Here is the error I have been getting:
[CPU: 208.2 MB] Traceback (most recent call last):
File "cryosparc_master/cryosparc_compute/run.py", line 84, in cryosparc_compute.run.main
File "/home/spuser/cryosparc/cryosparc_master/cryosparc_compute/jobs/manual_picker/run_inspect_simple.py", line 432, in run_inspect_simple
ax.hist2d(xvals, yvals, bins=50, range=[[xmin,xmax],[ymin,ymax]])
File "/home/spuser/cryosparc/cryosparc_master/deps/anaconda/envs/cryosparc_master_env/lib/python3.7/site-packages/matplotlib/__init__.py", line 1438, in inner
return func(ax, *map(sanitize_sequence, args), **kwargs)
File "/home/spuser/cryosparc/cryosparc_master/deps/anaconda/envs/cryosparc_master_env/lib/python3.7/site-packages/matplotlib/axes/_axes.py", line 6915, in hist2d
density=density, weights=weights)
File "<__array_function__ internals>", line 6, in histogram2d
File "/home/spuser/cryosparc/cryosparc_master/deps/anaconda/envs/cryosparc_master_env/lib/python3.7/site-packages/numpy/lib/twodim_base.py", line 713, in histogram2d
hist, edges = histogramdd([x, y], bins, range, normed, weights, density)
File "<__array_function__ internals>", line 6, in histogramdd
File "/home/spuser/cryosparc/cryosparc_master/deps/anaconda/envs/cryosparc_master_env/lib/python3.7/site-packages/numpy/lib/histograms.py", line 1049, in histogramdd
smin, smax = _get_outer_edges(sample[:,i], range[i])
File "/home/spuser/cryosparc/cryosparc_master/deps/anaconda/envs/cryosparc_master_env/lib/python3.7/site-packages/numpy/lib/histograms.py", line 316, in _get_outer_edges
"supplied range of [{}, {}] is not finite".format(first_edge, last_edge))
ValueError: supplied range of [nan, nan] is not finite