I’m following Case 1 of the EPU AFIS Beam Shift Import. Using the “Import Movies” job, my .eer files are well imported however, my .xml files were not (1st Image). I do not receive any error messages from this.
The .xml files are only able to be read through the “Import Beam Shift” job. Is there something I’m missing to allow the .xml files to be read in “Import Movies”? I included the beam shift scatter plot from my “Import Beam Shift” job.
If the micrographs and xml files are in the same place (each pair is in the same directory) you don’t need to specify a directory for the xml files - CryoSPARC will pick them up automatically.
Also, if using a version of EPU newer than 3.7(.1), beam shift groups are included in the filename, so you can split the optics groups up like you would data from SerialEM without needing the xml.