Interpreting Deep Picker Train Results

Hi all,

I ran a Deep Picker train on about 5000 particles and I got the following results.

Comparing this to the T20S dataset results, I obviously am missing the plots in the training and validation losses graph. The accuracies also seem to be off but I’m not sure what to expect per se. I’m unsure how to interpret these results. Any suggestions?

The Deep Picker inputs are as follows

Thank you


Update: After running the Deeppicker with a few different parameters, I went ahead and did the Deep Picker Inference. It did not pick any particles. I have a feeling the model may not have worked correctly. I’m not sure what I am doing wrong here. Any suggestions?

hi vamsee, did you managed to sort it out? I am having the same problem.

Hi Gorka, no, I haven’t been able to get around to it. I’ve been using Topaz for now but I’d really like to see if I get better or comparable results with Deeppicker.