Hi,
I face the problem about installation of Cryosparc2.11. Look at the following:
[fanhc@Purple cryosparc2_master]$ ./install.sh --standalone --license $LICENSE_ID --worker_path /home/fanhc/cryosparc/cryosparc2_worker/ --cudapath /usr/local/cuda-8.0 --initial_email xxxx --initial_password xxxx--initial_name xxxx --nossd
************ CRYOSPARC SYSTEM: MASTER INSTALLER **************
Installation Settings:
License ID : xxxx
Root Directory : /home/fanhc/cryosparc/cryosparc2_master
Master Hostname : Purple
Database Directory : /home/fanhc/cryosparc/cryosparc2_database
Base HTTP Port Number : 39000
Developer Install : false
Operating System : Linux
Insecure Install : false
Standalone Install : true
Worker Root Directory : /home/fanhc/cryosparc/cryosparc2_worker/
Initial User Email : xxxx
Initial User Password : xxxx
Initial User Name : xxxx
CUDA Path : /usr/local/cuda-8.0
SSD : false
Version : v2.11.0
******************************************************************
The cryoSPARC System master installation will host a database,
web application, and command layer for cryoSPARC, but will not
perform processing jobs.
Please read and confirm the above settings. The cryoSPARC database
will be stored at the database directory which is relative to the
root directory, unless provided as an absolute path.
You can change the database directory now by passing the --dbapth
parameter to this installer, or later via the command line.
Are the above settings correct?
1) Yes
2) No
#? 1
Continuing.
******************************************************************
Setting up hard-coded config.sh environment variables
******************************************************************
Installing all dependencies.
Checking dependencies...
Dependencies for python have not changed.
Currently checking hash for mongodb
Dependencies for mongodb have not changed.
Completed dependency check.
************ CRYOSPARC MASTER INSTALLATION COMPLETE **************
CryoSPARC System master has now been installed.
Add bin directory to your ~/.bashrc ?
1) Yes
2) No
#? 1
The following lines were appended to your ~/.bashrc:
export PATH=/home/fanhc/cryosparc/cryosparc2_master/bin:$PATH
************ CRYOSPARC SYSTEM: STANDALONE INSTALLER **************
The installer will now download, install and connect the worker
package on this machine. The worker package will allow cryoSPARC
to run compute jobs.
******************************************************************
Starting cryoSPARC...
Starting cryoSPARC System master process..
CryoSPARC is already running.
If you would like to restart, use cryosparcm restart
******************************************************************
Creating the initial cryoSPARC user...
Creating user xxxx with email: xxxx password: xxxx
*** client.py: command (http://Purple:39002/api) did not reply within timeout of 300 seconds, attempt 1 of 3
*** client.py: command (http://Purple:39002/api) did not reply within timeout of 300 seconds, attempt 2 of 3
*** client.py: command (http://Purple:39002/api) did not reply within timeout of 300 seconds, attempt 3 of 3
Traceback (most recent call last):
File "/home/fanhc/cryosparc/cryosparc2_master/deps/anaconda/lib/python2.7/runpy.py", line 174, in _run_module_as_main
"__main__", fname, loader, pkg_name)
File "/home/fanhc/cryosparc/cryosparc2_master/deps/anaconda/lib/python2.7/runpy.py", line 72, in _run_code
exec code in run_globals
File "/home/fanhc/cryosparc/cryosparc2_master/cryosparc2_compute/client.py", line 82, in <module>
cli = CommandClient(host, int(port))
File "/home/fanhc/cryosparc/cryosparc2_master/cryosparc2_compute/client.py", line 33, in __init__
self._reload()
File "/home/fanhc/cryosparc/cryosparc2_master/cryosparc2_compute/client.py", line 61, in _reload
system = self._get_callable('system.describe')()
File "/home/fanhc/cryosparc/cryosparc2_master/cryosparc2_compute/client.py", line 49, in func
r = requests.post(self.url, data = json.dumps(data, cls=NumpyEncoder), headers = header, timeout=self.timeout)
File "/home/fanhc/cryosparc/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/requests/api.py", line 116, in post
return request('post', url, data=data, json=json, **kwargs)
File "/home/fanhc/cryosparc/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/requests/api.py", line 60, in request
return session.request(method=method, url=url, **kwargs)
File "/home/fanhc/cryosparc/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/requests/sessions.py", line 533, in request
resp = self.send(prep, **send_kwargs)
File "/home/fanhc/cryosparc/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/requests/sessions.py", line 646, in send
r = adapter.send(request, **kwargs)
File "/home/fanhc/cryosparc/cryosparc2_master/deps/anaconda/lib/python2.7/site-packages/requests/adapters.py", line 516, in send
raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPConnectionPool(host='purple', port=39002): Max retries exceeded with url: /api (Caused by NewConnectionError('<urllib3.connection.HTTPConnection object at 0x7f65a3491990>: Failed to establish a new connection: [Errno 111] Connection refused',))
[fanhc@Purple cryosparc2_master]$
How to solve it? Thank you
