Hi - I’m trying to import some negative stain data to do a initial rough data check. When I try to import the mrc files as a micrograph I get the following:
Traceback (most recent call last):
File “cryosparc_master/cryosparc_compute/run.py”, line 129, in cryosparc_master.cryosparc_compute.run.main
File “/data/home/svc_rmlcryoprd1/cryosparc_worker/cryosparc_compute/jobs/imports/run.py”, line 813, in run_import_movies_or_micrographs
assert len(all_abs_paths) > 0, “No files match!”
AssertionError: No files match!
my import path is formatted as such Projects/Sample/*.mrc.
We don’t do this very often so I’m sure I’m missing something super obvious and simple, but any suggestions would be greatly appreciated. Thanks!
Please can you confirm that the Micrographs data path
- starts with the
/ character
- does not contain printing or non-printing characters that may have an ambiguous meaning, such as spaces?
Is the parameter specified using the web browser’s file selection dialog
or by typing into the parameter field?
Specific suggestions (including some diagnostic commands) might be easier to come by with a concrete example of a failing
Micrographs data path, such as provided by the command
cryosparcm cli "get_job('P99', 'J199', 'params_spec', 'type', 'errors_run')"
where P99 and J199 would have been replaced by the project and job IDs of a failed Import Micrographs job.
I navigated to the path using the web browser’s file selection dialog. It does start with a / character and no other ‘bad characters’ are in the string. I ended up finding the issue. We recently rebuilt the storage on our HPC and I didn’t notice I was in the ‘old’ path and not the new one. Sorry about that.
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