Illegal job id "submitted." when trying to get status

Troubleshooting
6

Hi @GeneF,

Deleting CryoSPARC files can definitely cause issues with the system and cause errors that need to be manually fixed.

Could you please try the following:

  1. Set projects to deleted manually for each project where the project folder was deleted
cryosparcm icli
db.projects.update_one({'uid':'P1'}, {'$set': {'deleted':True}})
  1. Set jobs to killed status manually for each job where the cluster id was set to “submitted”
cryosparcm icli
# do this for each problematic job
db.jobs.update_one({'project_uid': 'P1', 'uid':'J1'}, {'$set': {'status':'killed'}})
# or to update all of them at once
db.jobs.update_many({'cluster_job_id': 'submitted.'}, {'$set': {'status':'killed'}})

For future use, projects in CryoSPARC should be deleted in the webapp or with cryosparcm cli "delete_project()" before the project folder is deleted.