Hi,
I would like to use exposure group utilities on particles directly after extraction (as part of splitting into beam tilt groups after repicking a dataset with topaz).
Currently exposure group utilities seems to require orientations from a prior refinement (see error). This does not seem required for the underlying functionality, so would it be possible to remove this requirement?
Cheers
Oli
Thanks @olibclarke for reporting. Please can you post the text of the error message to make this discussion more “findable” for future visitors of the forum.
Had the job where the error occurred just been created and built “from scratch”, or was this a clone or re-run of an older job?
Here you go:
Traceback (most recent call last):
File "cryosparc_master/cryosparc_compute/run.py", line 100, in cryosparc_compute.run.main
File "/home/user/software/cryosparc/cryosparc2_master/cryosparc_compute/jobs/runcommon.py", line 1074, in passthrough_outputs
dset = load_input_group(input_group_name, passthrough_result_names, allow_passthrough=True, memoize=True)
File "/home/user/software/cryosparc/cryosparc2_master/cryosparc_compute/jobs/runcommon.py", line 664, in load_input_group
dsets = [load_input_connection_slots(input_group_name, keep_slot_names, idx, allow_passthrough=allow_passthrough, memoize=memoize) for idx in range(num_connections)]
File "/home/user/software/cryosparc/cryosparc2_master/cryosparc_compute/jobs/runcommon.py", line 664, in <listcomp>
dsets = [load_input_connection_slots(input_group_name, keep_slot_names, idx, allow_passthrough=allow_passthrough, memoize=memoize) for idx in range(num_connections)]
File "/home/user/software/cryosparc/cryosparc2_master/cryosparc_compute/jobs/runcommon.py", line 635, in load_input_connection_slots
dsets = [load_input_connection_single_slot(input_group_name, slot_name, connection_idx, allow_passthrough=allow_passthrough, memoize=memoize) for slot_name in slot_names]
File "/home/user/software/cryosparc/cryosparc2_master/cryosparc_compute/jobs/runcommon.py", line 635, in <listcomp>
dsets = [load_input_connection_single_slot(input_group_name, slot_name, connection_idx, allow_passthrough=allow_passthrough, memoize=memoize) for slot_name in slot_names]
File "/home/user/software/cryosparc/cryosparc2_master/cryosparc_compute/jobs/runcommon.py", line 625, in load_input_connection_single_slot
output_result = com.query(otherjob['output_results'], lambda r : r['group_name'] == slotconnection['group_name'] and r['name'] == slotconnection['result_name'], error='No match for %s.%s in job %s' % (slotconnection['group_name'], slotconnection['result_name'], job['uid']))
File "/home/user/software/cryosparc/cryosparc2_master/cryosparc_compute/jobs/common.py", line 699, in query
assert res != default, error
AssertionError: No match for particles.alignments3D in job J1628
The job was cloned from a previous job and the inputs swapped out, but the previous job was created in the same version of cryoSPARC a few days before.
Hello,
I get the same error, but with a 2D classification. It only happens if the job has been cloned, but runs normally if I remove and then re-add the same inputs again.
Hope this helps.