Exporting job without symlinks to volumes, but excluding particles

Features and Functionality
1

Hi,
I am not sure if this is possible. I would like to export refinement jobs and include the volume results. It looks like cryosparc makes symbolic links to the results volumes.
If I pass the dereference flag and tar, will it also include the particles? I don’t need the particles in the final export, just the results files.

The guid is a bit ambiguous. What are the referenced raw files?

“Ensure to pass the “dereference” -h argument if you want to include all the referenced raw files.”

Thanks!

2

Ensure to pass the “dereference” -h argument if you want to include all the referenced raw files.

The tar -h option is “unaware” of concepts in cryo-EM. For example, tar does not distinguish between symbolic links to map files and symbolic links to particle micrographs.
To see which files inside an exported job directory are symbolic links, you may, for example

# move inside the exported job directory
cd /path/to/project_dir/exports/jobs/J99_homo-refine_new/
# show symbolic links
find . -type l -ls