Hi @hsnyder，
After applying the patches release yesterday(Patch 210601, Patch 210601 is available for cryoSPARC v3.2.0), I reran the job. The error message became like this:
It seems that the argument {‘nx’,‘ny’} in this particle stack is invalid. I wonder how this heppened. Is there any way to solve this problem, or quickly identify and remove these invalid particle stacks?
Thanks!
Traceback (most recent call last):
File “/home/lliulab/cryosparc/cryosparc_worker/cryosparc_compute/jobs/runcommon.py”, line 1791, in run_with_except_hook
run_old(*args, **kw)
File “cryosparc_worker/cryosparc_compute/engine/cuda_core.py”, line 131, in cryosparc_compute.engine.cuda_core.GPUThread.run
File “cryosparc_worker/cryosparc_compute/engine/cuda_core.py”, line 132, in cryosparc_compute.engine.cuda_core.GPUThread.run
File “cryosparc_worker/cryosparc_compute/engine/engine.py”, line 1027, in cryosparc_compute.engine.engine.process.work
File “cryosparc_worker/cryosparc_compute/engine/engine.py”, line 87, in cryosparc_compute.engine.engine.EngineThread.load_image_data_gpu
File “/home/lliulab/cryosparc/cryosparc_worker/cryosparc_compute/particles.py”, line 15, in get_original_real_data
return self.blob.view().copy()
File “/home/lliulab/cryosparc/cryosparc_worker/cryosparc_compute/blobio/mrc.py”, line 115, in view
return self.get()
File “/home/lliulab/cryosparc/cryosparc_worker/cryosparc_compute/blobio/mrc.py”, line 110, in get
_, data, total_time = prefetch.synchronous_native_read(self.fname, idx_start = self.page, idx_limit = self.page+1)
File “cryosparc_worker/cryosparc_compute/blobio/prefetch.py”, line 64, in cryosparc_compute.blobio.prefetch.synchronous_native_read
RuntimeError: mrc_readmic (1) 447: Invalid argument
[arguments] /bakup/cryo_cache/instance_login01:39001/projects/P3/J97/extract/FoilHole_28282941_Data_28275789_28275791_20210428_165950_fractions_particles.mrc, 0, 0, 431, 432, 2, 40