Error in Volume Tool for padding mask

Utilities
1

Hello,

CS version:v4.3.0
input: a mask generated in ChimeraX
set up the parameters for Threshold, dilation, Soft padding width and the output name

Error:
Traceback (most recent call last):
File “cryosparc_master/cryosparc_compute/run.py”, line 96, in cryosparc_compute.run.main
File “/usr/local/em/cryosparc/yy314/cryosparc2_worker/cryosparc_compute/jobs/utilities/run_volume_tools.py”, line 62, in run
input_shape = volumes_dset[volume_type+‘/shape’][0]
TypeError: ‘NoneType’ object is not subscriptable

Thanks for your help in advance!

2

Please can you show screenshots of the expanded

  1. Inputs
  2. Parameters

sections under the job’s Inputs and Parameters tab.

3

Hello,
Sorry for the late reply. Here is the screenshot of the inputs and paramters.

J337
J3371203×736 171 KB

Thanks!
Yahui

4

What happens if you specify the type input and output as “mask” instead of “map”?

1 Like
5

Thanks very much. Yes, it worked.