Deep picker problem

Particle Picking
1

Hi All,

Recently gave the deep picker a go but immediately ran into an error:
Traceback (most recent call last):
File “cryosparc2_worker/cryosparc2_compute/run.py”, line 72, in cryosparc2_compute.run.main
File “cryosparc2_compute/jobs/jobregister.py”, line 333, in get_run_function
modname = job_types_modules[str(job_type)][‘run_module’]
KeyError: ‘deep_picker_train’

Any ideas?
Omid

2

Hi Omid,

Sometimes new job types aren’t correctly recognized after an upgrade.

Try ‘cryosparcm restart’ followed by ‘ cryosparcm cli “refresh_job_types()”’

Cheers
Oli

3

Hi Oli,

Thanks for the quick response. All other jobs run fine including the Topaz picker. Just the deep picker seem to give me this error.

Best,
Omid

4

Hi Omid

that makes sense though - Topaz was present in 2.15, deep picker is new in 2.16/3.0 - try the command I posted and see if it fixes the problem

Cheers
Oli

5

Ah okay. Just waiting for a run to finish. Will give it a go and let know. Thanks again

6

Hi Oli,

Tried to command above. Still go the same issue. Thanks though.

Best,
Omid

7

hmmm that’s weird - did the command seem to work? it refreshed the job types? otherwise I’m at a loss, because the error you posted indicates it cannot locate that particular job type

8

Yeah, maybe something went wrong during the update. I am getting errors all over the place that are strange. Will re-install and see what happens.

Thanks again for you help Oli! Stay safe

9

Hi Oli,
You were spot on. Was an install issue. Had to do a fresh install and everything including the deep picker is working. Thanks a ton

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