Csparc2star cannot import name 'metadata' from 'pyem'

Import and Export
1

I run the following command:

$ ./csparc2star.py /path/to/cryosparc/P55/J111/particles.cs from_csparc.star

Which returns the error:

Traceback (most recent call last):
  File "./csparc2star.py", line 28, in <module>
    from pyem import metadata
ImportError: cannot import name 'metadata' from 'pyem' /home/myusername/.local/lib/python3.7/site-packages/pyem/__init__.py)

Useful info

$ which python
/opt/anaconda2/bin//python

$ python --version
Python 3.7.0

pyem installed through:
$ pip install pyem Version of pyem is 2.1.0

Any suggestion on how to resolve this would be much appreciated.
Error has been submitted also in github.

1 Like
2

Hi @ghatzop ,
Follow this: Install pyem with Miniconda · asarnow/pyem Wiki · GitHub
It’ll help.