cryoSPARC v2 → v3 Update Issues

Install, Configure and Update
6

Can you send me the long directory listing for the cryosparc2_worker/deps/anaconda/bin folder? i.e., the output of

ls -la cryosparc2_worker/deps/anaconda/bin

This will help me further troubleshoot why this is happening.

Then I think you should be able to get it working like this:

  1. Change the permissions to each file in cryosparc2_worker/deps/anaconda/bin to 0755, as you did before
  2. On a machine with GPUs, navigate into the worker directory
    cd cryosparc2_worker
  3. Enable cryoSPARC’s worker python environment in your current shell:
    eval $(bin/cryosparcw env)
  4. Run these commands to finish installing pip dependencies, including pycuda
    pip install deps_bundle/python/python_packages/pip_packages/* --no-dependencies --no-binary :all: --force-reinstall

Save any errors you get in this process and send them to me.

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