hello @wtempel, I reinstalled the CS.
The error for Patch motion correction seems to be there - please check below.
================= CRYOSPARCW ======= 2023-02-01 21:15:54.499434 =========
Project P2 Job J2
Master DESKTOP-D1IHD96. Port 39002
========= monitor process now starting main process at 2023-02-01 21:15:54.499458
MAINPROCESS PID 2214
MAIN PID 2214
motioncorrection.run_patch cryosparc_compute.jobs.jobregister
========= monitor process now waiting for main process
Running job on hostname %s DESKTOP-D1IHD96.
Allocated Resources : {‘fixed’: {‘SSD’: False}, ‘hostname’: ‘DESKTOP-D1IHD96.’, ‘lane’: ‘default’, ‘lane_type’: ‘node’, ‘license’: True, ‘licenses_acquired’: 1, ‘slots’: {‘CPU’: [0, 1, 2, 3, 4, 5], ‘GPU’: [0], ‘RAM’: [0]}, ‘target’: {‘cache_path’: None, ‘cache_quota_mb’: None, ‘cache_reserve_mb’: 10000, ‘desc’: None, ‘gpus’: [{‘id’: 0, ‘mem’: 6441926656, ‘name’: ‘NVIDIA GeForce RTX 3060 Laptop GPU’}], ‘hostname’: ‘DESKTOP-D1IHD96.’, ‘lane’: ‘default’, ‘monitor_port’: None, ‘name’: ‘DESKTOP-D1IHD96.’, ‘resource_fixed’: {‘SSD’: False}, ‘resource_slots’: {‘CPU’: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15], ‘GPU’: [0], ‘RAM’: [0]}, ‘ssh_str’: ‘david@DESKTOP-D1IHD96.’, ‘title’: ‘Worker node DESKTOP-D1IHD96.’, ‘type’: ‘node’, ‘worker_bin_path’: ‘/home/david/cryosparc/cryosparc_worker/bin/cryosparcw’}}
Process Process-1:1:
Traceback (most recent call last):
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/process.py”, line 315, in _bootstrap
self.run()
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/process.py”, line 108, in run
self._target(*self._args, **self._kwargs)
File “/home/david/cryosparc/cryosparc_worker/cryosparc_compute/jobs/pipeline.py”, line 200, in process_work_simple
process_setup(proc_idx) # do any setup you want on a per-process basis
File “cryosparc_master/cryosparc_compute/jobs/motioncorrection/run_patch.py”, line 81, in cryosparc_compute.jobs.motioncorrection.run_patch.run_patch_motion_correction_multi.process_setup
File “/home/david/cryosparc/cryosparc_worker/cryosparc_compute/engine/init.py”, line 8, in
from .engine import * # noqa
File “cryosparc_master/cryosparc_compute/engine/engine.py”, line 9, in init cryosparc_compute.engine.engine
File “cryosparc_master/cryosparc_compute/engine/cuda_core.py”, line 12, in init cryosparc_compute.engine.cuda_core
File “/home/david/cryosparc/cryosparc_worker/cryosparc_compute/skcuda_internal/fft.py”, line 27, in
from . import misc2 as misc
File “/home/david/cryosparc/cryosparc_worker/cryosparc_compute/skcuda_internal/misc2.py”, line 32, in
from . import cuda
File “/home/david/cryosparc/cryosparc_worker/cryosparc_compute/skcuda_internal/cuda.py”, line 17, in
from .cudadrv import *
File “/home/david/cryosparc/cryosparc_worker/cryosparc_compute/skcuda_internal/cudadrv.py”, line 39, in
raise OSError(‘CUDA driver library not found’)
OSError: CUDA driver library not found
========= sending heartbeat at 2023-02-01 21:16:07.912244
========= sending heartbeat at 2023-02-01 21:16:17.942878
========= sending heartbeat at 2023-02-01 21:16:27.955907
Traceback (most recent call last):
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/queues.py”, line 245, in _feed
send_bytes(obj)
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 200, in send_bytes
self._send_bytes(m[offset:offset + size])
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 411, in _send_bytes
self._send(header + buf)
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 368, in _send
n = write(self._handle, buf)
BrokenPipeError: [Errno 32] Broken pipe
Traceback (most recent call last):
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/queues.py”, line 245, in _feed
send_bytes(obj)
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 200, in send_bytes
self._send_bytes(m[offset:offset + size])
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 411, in _send_bytes
self._send(header + buf)
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 368, in _send
n = write(self._handle, buf)
BrokenPipeError: [Errno 32] Broken pipe
Traceback (most recent call last):
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/queues.py”, line 245, in _feed
send_bytes(obj)
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 200, in send_bytes
self._send_bytes(m[offset:offset + size])
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 411, in _send_bytes
self._send(header + buf)
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 368, in _send
n = write(self._handle, buf)
BrokenPipeError: [Errno 32] Broken pipe
Traceback (most recent call last):
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/queues.py”, line 245, in _feed
send_bytes(obj)
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 200, in send_bytes
self._send_bytes(m[offset:offset + size])
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 411, in _send_bytes
self._send(header + buf)
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 368, in _send
n = write(self._handle, buf)
BrokenPipeError: [Errno 32] Broken pipe
Traceback (most recent call last):
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/queues.py”, line 245, in _feed
send_bytes(obj)
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 200, in send_bytes
self._send_bytes(m[offset:offset + size])
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 411, in _send_bytes
self._send(header + buf)
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 368, in _send
n = write(self._handle, buf)
BrokenPipeError: [Errno 32] Broken pipe
Traceback (most recent call last):
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/queues.py”, line 245, in _feed
send_bytes(obj)
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 200, in send_bytes
self._send_bytes(m[offset:offset + size])
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 411, in _send_bytes
self._send(header + buf)
File “/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/multiprocessing/connection.py”, line 368, in _send
n = write(self._handle, buf)
BrokenPipeError: [Errno 32] Broken pipe
/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/site-packages/numpy/core/fromnumeric.py:3372: RuntimeWarning: Mean of empty slice.
return _methods._mean(a, axis=axis, dtype=dtype,
/home/david/cryosparc/cryosparc_worker/deps/anaconda/envs/cryosparc_worker_env/lib/python3.8/site-packages/numpy/core/_methods.py:170: RuntimeWarning: invalid value encountered in double_scalars
ret = ret.dtype.type(ret / rcount)
========= main process now complete at 2023-02-01 21:16:30.075298.
========= monitor process now complete at 2023-02-01 21:16:30.077514.