Hi,
We are having issues with running cryosparc live on one of our systems running 4.6.2. These files can be processed fine in the cryosparc job interface on this system and fail only in a live session. System has slurm installed. Files are EER movies. On three other different systems, one running 4.3.0 and the other two running 4.6.2 these files are able to be processed in live.
Any help would be appreciated to solve this, this is what we are getting in the job.log:
================= CRYOSPARCW ======= 2024-12-09 12:03:16.862227 =========
Project P20 Job J7
Master allspark.structbio.pitt.edu Port 39002
===========================================================================
MAIN PROCESS PID 1140532
========= now starting main process at 2024-12-09 12:03:16.862655
rtp_workers.run cryosparc_compute.jobs.jobregister
MONITOR PROCESS PID 1140534
========= monitor process now waiting for main process
========= sending heartbeat at 2024-12-09 12:03:18.613453
Exception ignored in: <cyfunction Prefetch.del at 0x7fca2ad168e0>
Traceback (most recent call last):
File “cryosparc_master/cryosparc_compute/blobio/prefetch.py”, line 74, in cryosparc_master.cryosparc_compute.blobio.prefetch.Prefetch.del
AttributeError: ‘Prefetch’ object has no attribute ‘handle’
Traceback (most recent call last):
File “cryosparc_master/cryosparc_compute/jobs/rtp_workers/run.py”, line 100, in cryosparc_master.cryosparc_compute.jobs.rtp_workers.run.RTPExposureCache.prefetch_exposure
File “cryosparc_master/cryosparc_compute/blobio/prefetch.py”, line 41, in cryosparc_master.cryosparc_compute.blobio.prefetch.Prefetch.init
File “cryosparc_master/cryosparc_compute/blobio/prefetch.py”, line 94, in cryosparc_master.cryosparc_compute.blobio.prefetch.validate_read_parameters
AssertionError
Transparent hugepages setting: [always] madvise never
========= sending heartbeat at 2024-12-09 12:03:28.632482
Exception ignored in: <cyfunction Prefetch.del at 0x7fca2ad168e0>
Traceback (most recent call last):
File “cryosparc_master/cryosparc_compute/blobio/prefetch.py”, line 74, in cryosparc_master.cryosparc_compute.blobio.prefetch.Prefetch.del
AttributeError: ‘Prefetch’ object has no attribute ‘handle’
Traceback (most recent call last):
File “cryosparc_master/cryosparc_compute/jobs/rtp_workers/run.py”, line 100, in cryosparc_master.cryosparc_compute.jobs.rtp_workers.run.RTPExposureCache.prefetch_exposure
File “cryosparc_master/cryosparc_compute/blobio/prefetch.py”, line 41, in cryosparc_master.cryosparc_compute.blobio.prefetch.Prefetch.init
File “cryosparc_master/cryosparc_compute/blobio/prefetch.py”, line 94, in cryosparc_master.cryosparc_compute.blobio.prefetch.validate_read_parameters
AssertionError
========= sending heartbeat at 2024-12-09 12:03:38.652097
Exception ignored in: <cyfunction Prefetch.del at 0x7fca2ad168e0>
Traceback (most recent call last):
File “cryosparc_master/cryosparc_compute/blobio/prefetch.py”, line 74, in cryosparc_master.cryosparc_compute.blobio.prefetch.Prefetch.del
AttributeError: ‘Prefetch’ object has no attribute ‘handle’
Traceback (most recent call last):
File “cryosparc_master/cryosparc_compute/jobs/rtp_workers/run.py”, line 100, in cryosparc_master.cryosparc_compute.jobs.rtp_workers.run.RTPExposureCache.prefetch_exposure
File “cryosparc_master/cryosparc_compute/blobio/prefetch.py”, line 41, in cryosparc_master.cryosparc_compute.blobio.prefetch.Prefetch.init
File “cryosparc_master/cryosparc_compute/blobio/prefetch.py”, line 94, in cryosparc_master.cryosparc_compute.blobio.prefetch.validate_read_parameters
AssertionError
========= main process now complete at 2024-12-09 12:03:45.159638
Total: 21.092s
MAIN THREAD:
