Calls for more input options in Topaz Extract job

Features and Functionality
1

Hi developers,
Could you add a function to define how many CPUs to use in a Topaz Extract job? By default it use 1 CPU and cannot modify within cryosparc web UI. This makes the preprocessing procudure toooooo slow.

2

Hi @hxn,

Can you point me towards the Topaz documentation that outlines where to specify the number of CPUs to use for the Topaz Extract job?

3

Hi

Just as a follow on from this, the topaz gui option shows the option for specifying the number of CPUs from the NYSBC page under Preprocessing and Extract.

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Where the default in cryoSPARC is 0 and for all cores its -1, would it be possible to put an option to specify the number of cores?

Apologies if I missed if this had been spoken about else where.

Regards
Mike

4

Hi @mplockhartuom and @hxn,

Thank you for your suggestion. We added an option to specify the number of CPU cores and will be included in the next release of cryoSPARC.

Regards,
Jay Yoo

1 Like
5

This has been done in v2.13.