Blob picking algorithm ignoring many useful particles

Hi everyone,

I’m encountering an issue with blob picking for ribosomes in my micrographs. The particles are between 150-250 Å in size, and I’ve selected both circular and elliptical options. However, the algorithm is ignoring a lot of blobs that are clearly visible to the naked eye.

Adjusting the settings in the graph on the left panel allows me to reduce the number of picks, but I can’t seem to make it more inclusive to capture the missed particles. Is there a specific setting or approach I might be overlooking to improve detection?

Any suggestions would be greatly appreciated!

Thank you,
MNP

Hi,

Tried using a smaller Min. separation distance? It works in concert with the Minimum particle diameter-value to determine how close to allow picks. Could try ~0.4-0.6 depending on how appropriate the minimum diameter value is to begin with.

Cheers,
Yang

Agreed re varying min separation distance, I would also highly recommend trying picking on micrographs generated by Micrograph Denoise, we have found that very helpful for small particles, particularly where distinguishing from aggregate is an issue.

Thank you! Will try that! This was really helpful! :slight_smile:

Sounds good! Thank you! This is very helpful :slight_smile: