Hi @wtempel,
here is an example of ls -lHs
ls -lHs /ceph/pathtofolder/links/P104-J139-1779702472/9d6ec123207a1df873e711671c7b454ea6ad8053.mrc
ls: cannot access ‘/ceph/pathtofolder/links/P104-J139-1779702472/9d6ec123207a1df873e711671c7b454ea6ad8053.mrc’: No such file or directory
The whole error text:
Traceback (most recent call last): File “/opt/cryosparc_worker/cryosparc_compute/jobs/runcommon.py”, line 2306, in run_with_except_hook run_old(*args, **kw) File “cryosparc_master/cryosparc_compute/gpu/gpucore.py”, line 136, in cryosparc_master.cryosparc_compute.gpu.gpucore.GPUThread.run File “cryosparc_master/cryosparc_compute/gpu/gpucore.py”, line 137, in cryosparc_master.cryosparc_compute.gpu.gpucore.GPUThread.run File “cryosparc_master/cryosparc_compute/jobs/class2D/newrun.py”, line 620, in cryosparc_master.cryosparc_compute.jobs.class2D.newrun.class2D_engine_run.work File “cryosparc_master/cryosparc_compute/engine/newengine.py”, line 566, in cryosparc_master.cryosparc_compute.engine.newengine.EngineThread.read_image_data File “/opt/cryosparc_worker/cryosparc_compute/ioengine/cmdbuf.py”, line 87, in wait raise IOError(‘\n\n’.join(errs)) OSError: I/O error, iosys_process_cached_fd_reads line 2311: Interrupted system call The file is probably corrupt. If this is a movie, try deleting it and re-importing the movie set. If this is a particle stack, try the ‘check for corrupt particles’ job (if corrupt particles are found, they will be excluded from the job’s output). I/O request details: filename: /ceph/pathtofolder/links/P104-J139-1779702472/9d6ec123207a1df873e711671c7b454ea6ad8053.mrc data type: 0x10 frames: [17:18] eer upsample factor: 2 eer number of fractions: 40