Yes of course, no problem:
Step 3:
env | grep PATH
LD_LIBRARY_PATH=/opt/cryosparc2/cryosparc2_worker/deps/external/cudnn/lib:/usr/local/lib:/opt/lib64:/usr/local/cuda/lib64:/usr/local/cuda-7.5/lib64:/opt/IMOD/lib:/opt/relion-3.1-b/lib:/usr/local/lib:/opt/lib64:/usr/local/cuda/lib64:/usr/local/cuda-7.5/lib64
PATH=/opt/cryosparc2/cryosparc2_worker/bin:/opt/cryosparc2/cryosparc2_worker/deps/anaconda/envs/cryosparc_worker_env/bin:/opt/cryosparc2/cryosparc2_worker/deps/anaconda/condabin:/home/spuser/bin:/home/spuser/.local/bin:/opt/cryosparc2/cryosparc2_master/bin:/data/cryosparc_user/software/cryosparc/cryosparc2_master/bin:/opt/cistem-1.0.0-beta:/opt/bin:/opt/sp/bin:/usr/lib64/openmpi/bin:/opt/motioncorr_v2.1/bin:/opt/frealign_v9.11/bin:/opt/bin:/usr/lib64/openmpi/bin:/usr/local/cuda/bin:/opt/IMOD/bin:/opt/relion-3.1-b/bin:/opt/cistem-1.0.0-beta:/opt/bin:/opt/sp/bin:/usr/lib64/openmpi/bin:/opt/motioncorr_v2.1/bin:/opt/frealign_v9.11/bin:/opt/bin:/usr/lib64/openmpi/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/local/cuda-8.0/bin:/snap/bin:/home/spuser/.dotnet/tools:/usr/local/cuda-8.0/bin
MODULEPATH=/opt/sp/modulefiles:/opt/sp/modulefiles:/etc/environment-modules/modules:/usr/share/modules/versions:/usr/Modules/$MODULE_VERSION/modulefiles:/usr/share/modules/modulefiles
CRYOSPARC_PATH=/opt/cryosparc2/cryosparc2_worker/bin
PYTHONPATH=/opt/cryosparc2/cryosparc2_worker
CRYOSPARC_CUDA_PATH=/usr/local/cuda-11.5
which nvcc
/opt/cryosparc2/cryosparc2_worker/deps/anaconda/envs/cryosparc_worker_env/bin/nvcc
nvcc --version
nvcc: NVIDIA (R) Cuda compiler driver
Copyright (c) 2005-2022 NVIDIA Corporation
Built on Wed_Sep_21_10:33:58_PDT_2022
Cuda compilation tools, release 11.8, V11.8.89
Build cuda_11.8.r11.8/compiler.31833905_0
/opt/cryosparc2/cryosparc2_worker/bin$ python -c “import pycuda.driver; print(pycuda.driver.get_version())”
(11, 8, 0)
/opt/cryosparc2/cryosparc2_worker/bin$ /sbin/ldconfig -p | grep -i cuda
libnvrtc.so.11.2 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnvrtc.so.11.2
libnvrtc.so.10.1 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnvrtc.so.10.1
libnvrtc.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnvrtc.so
libnvrtc.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnvrtc.so
libnvrtc-builtins.so.11.2 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnvrtc-builtins.so.11.2
libnvrtc-builtins.so.10.1 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnvrtc-builtins.so.10.1
libnvrtc-builtins.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnvrtc-builtins.so
libnvrtc-builtins.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnvrtc-builtins.so
libnvjpeg.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnvjpeg.so.11
libnvjpeg.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnvjpeg.so.10
libnvjpeg.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnvjpeg.so
libnvjpeg.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnvjpeg.so
libnvgraph.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnvgraph.so.10
libnvgraph.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnvgraph.so
libnvblas.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnvblas.so.11
libnvblas.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnvblas.so
libnvToolsExt.so.1 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnvToolsExt.so.1
libnvToolsExt.so.1 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnvToolsExt.so.1
libnvToolsExt.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnvToolsExt.so
libnvToolsExt.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnvToolsExt.so
libnpps.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnpps.so.11
libnpps.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnpps.so.10
libnpps.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnpps.so
libnpps.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnpps.so
libnppitc.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppitc.so.11
libnppitc.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppitc.so.10
libnppitc.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppitc.so
libnppitc.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppitc.so
libnppisu.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppisu.so.11
libnppisu.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppisu.so.10
libnppisu.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppisu.so
libnppisu.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppisu.so
libnppist.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppist.so.11
libnppist.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppist.so.10
libnppist.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppist.so
libnppist.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppist.so
libnppim.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppim.so.11
libnppim.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppim.so.10
libnppim.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppim.so
libnppim.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppim.so
libnppig.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppig.so.11
libnppig.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppig.so.10
libnppig.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppig.so
libnppig.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppig.so
libnppif.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppif.so.11
libnppif.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppif.so.10
libnppif.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppif.so
libnppif.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppif.so
libnppidei.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppidei.so.11
libnppidei.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppidei.so.10
libnppidei.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppidei.so
libnppidei.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppidei.so
libnppicom.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppicom.so.10
libnppicom.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppicom.so
libnppicc.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppicc.so.11
libnppicc.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppicc.so.10
libnppicc.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppicc.so
libnppicc.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppicc.so
libnppial.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppial.so.11
libnppial.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppial.so.10
libnppial.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppial.so
libnppial.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppial.so
libnppc.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppc.so.11
libnppc.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppc.so.10
libnppc.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libnppc.so
libnppc.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libnppc.so
libicudata.so.55 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libicudata.so.55
libicudata.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libicudata.so
libcusparse.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcusparse.so.11
libcusparse.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libcusparse.so.10
libcusparse.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libcusparse.so
libcusparse.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcusparse.so
libcusolverMg.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcusolverMg.so.11
libcusolverMg.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcusolverMg.so
libcusolver.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcusolver.so.11
libcusolver.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libcusolver.so.10
libcusolver.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libcusolver.so
libcusolver.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcusolver.so
libcurand.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libcurand.so.10
libcurand.so.10 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcurand.so.10
libcurand.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libcurand.so
libcurand.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcurand.so
libcuinj64.so.11.2 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcuinj64.so.11.2
libcuinj64.so.10.1 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libcuinj64.so.10.1
libcuinj64.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libcuinj64.so
libcuinj64.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcuinj64.so
libcufftw.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libcufftw.so.10
libcufftw.so.10 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcufftw.so.10
libcufftw.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libcufftw.so
libcufftw.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcufftw.so
libcufft.so.10 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libcufft.so.10
libcufft.so.10 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcufft.so.10
libcufft.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libcufft.so
libcufft.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcufft.so
libcudart.so.11.0 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcudart.so.11.0
libcudart.so.10.1 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libcudart.so.10.1
libcudart.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libcudart.so
libcudart.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcudart.so
libcudadebugger.so.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libcudadebugger.so.1
libcuda.so.1 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libcuda.so.1
libcuda.so.1 (libc6) => /usr/lib/i386-linux-gnu/libcuda.so.1
libcuda.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libcuda.so
libcuda.so (libc6) => /usr/lib/i386-linux-gnu/libcuda.so
libcublasLt.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcublasLt.so.11
libcublasLt.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcublasLt.so
libcublas.so.11 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcublas.so.11
libcublas.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libcublas.so
libaccinj64.so.11.2 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libaccinj64.so.11.2
libaccinj64.so.10.1 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libaccinj64.so.10.1
libaccinj64.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libaccinj64.so
libaccinj64.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libaccinj64.so
libOpenCL.so.1 (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libOpenCL.so.1
libOpenCL.so.1 (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libOpenCL.so.1
libOpenCL.so (libc6,x86-64) => /usr/local/cuda-10.1/targets/x86_64-linux/lib/libOpenCL.so
libOpenCL.so (libc6,x86-64) => /usr/local/cuda-11.2/targets/x86_64-linux/lib/libOpenCL.so
uname -a
Linux spgpu3 4.15.0-142-generic #146~16.04.1-Ubuntu SMP Tue Apr 13 09:27:15 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
free -g
total used free shared buff/cache available
Mem: 251 125 85 0 40 121
nvidia-smi
Fri May 5 14:19:04 2023
+-----------------------------------------------------------------------------+
| NVIDIA-SMI 525.105.17 Driver Version: 525.105.17 CUDA Version: 12.0 |
|-------------------------------+----------------------+----------------------+
| GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC |
| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. |
| | | MIG M. |
|===============================+======================+======================|
| 0 NVIDIA GeForce ... Off | 00000000:04:00.0 Off | N/A |
| 21% 39C P0 58W / 250W | 0MiB / 11264MiB | 0% Default |
| | | N/A |
+-------------------------------+----------------------+----------------------+
| 1 NVIDIA GeForce ... Off | 00000000:05:00.0 Off | N/A |
| 17% 35C P0 58W / 250W | 0MiB / 11264MiB | 0% Default |
| | | N/A |
+-------------------------------+----------------------+----------------------+
| 2 NVIDIA GeForce ... Off | 00000000:08:00.0 Off | N/A |
| 17% 29C P0 57W / 250W | 0MiB / 11264MiB | 0% Default |
| | | N/A |
+-------------------------------+----------------------+----------------------+
| 3 NVIDIA GeForce ... Off | 00000000:09:00.0 Off | N/A |
| 17% 36C P0 60W / 250W | 0MiB / 11264MiB | 0% Default |
| | | N/A |
+-------------------------------+----------------------+----------------------+
| 4 NVIDIA GeForce ... Off | 00000000:83:00.0 Off | N/A |
| 16% 33C P0 58W / 250W | 0MiB / 11264MiB | 0% Default |
| | | N/A |
+-------------------------------+----------------------+----------------------+
| 5 NVIDIA GeForce ... Off | 00000000:84:00.0 Off | N/A |
| 17% 36C P0 59W / 250W | 0MiB / 11264MiB | 0% Default |
| | | N/A |
+-------------------------------+----------------------+----------------------+
| 6 NVIDIA GeForce ... Off | 00000000:87:00.0 Off | N/A |
| 16% 33C P0 56W / 250W | 0MiB / 11264MiB | 0% Default |
| | | N/A |
+-------------------------------+----------------------+----------------------+
| 7 NVIDIA GeForce ... Off | 00000000:88:00.0 Off | N/A |
| 20% 39C P0 57W / 250W | 0MiB / 11264MiB | 1% Default |
| | | N/A |
+-------------------------------+----------------------+----------------------+
+-----------------------------------------------------------------------------+
| Processes: |
| GPU GI CI PID Type Process name GPU Memory |
| ID ID Usage |
|=============================================================================|
| No running processes found |
+-----------------------------------------------------------------------------+
And step 4:
opt/cryosparc2/cryosparc2_worker/bin/cryosparcw call /usr/bin/env | grep -v LICENSE
LC_PAPER=de_DE.UTF-8
MODULE_VERSION_STACK=3.2.10
RELION_ALLOW_CHANGE_MINIMUM_DEDICATED=0
CRYOSPARC_USE_GPU=true
XDG_SESSION_ID=532
LC_ADDRESS=de_DE.UTF-8
LC_MONETARY=de_DE.UTF-8
IMOD_DIR=/opt/IMOD
SHELL=/bin/bash
TERM=xterm
IMOD_QTLIBDIR=/opt/IMOD/qtlib
PYTHONNOUSERSITE=true
SSH_CLIENT= # redacted #
CONDA_SHLVL=1
RELION_WARNING_LOCAL_MPI=12
CONDA_PROMPT_MODIFIER=(cryosparc_worker_env)
CRYOSPARC_CONDA_ENV=cryosparc_worker_env
LD_PRELOAD=/opt/cryosparc2/cryosparc2_worker/deps/anaconda/envs/cryosparc_worker_env/lib/libpython3.8.so
LC_NUMERIC=de_DE.UTF-8
RELION_MOTIONCOR2_EXECUTABLE=/opt/motioncor2-bin-2.0.0/bin/MotionCor2
OLDPWD=/opt/cryosparc2/cryosparc2_worker
SSH_TTY=/dev/pts/0
RELION_PDFVIEWER_EXECUTABLE=evince
CRYOSPARC_DEVELOP=false
USER=spuser
CUDA_HOME=/usr/local/cuda
LC_TELEPHONE=de_DE.UTF-8
LD_LIBRARY_PATH=/opt/cryosparc2/cryosparc2_worker/deps/external/cudnn/lib:/usr/local/lib:/opt/lib64:/usr/local/cuda/lib64:/usr/local/cuda-7.5/lib64:/opt/IMOD/lib:/opt/relion-3.1-b/lib:/usr/local/lib:/opt/lib64:/usr/local/cuda/lib64:/usr/local/cuda-7.5/lib64
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
CONDA_EXE=/opt/cryosparc2/cryosparc2_worker/deps/anaconda/bin/conda
RELION_UNBLUR_EXECUTABLE=/opt/bin/unblur_openmp_7_17_15.exe
RELION_MINIMUM_DEDICATED=32
_CE_CONDA=
PATH=/opt/cryosparc2/cryosparc2_worker/bin:/opt/cryosparc2/cryosparc2_worker/deps/anaconda/envs/cryosparc_worker_env/bin:/opt/cryosparc2/cryosparc2_worker/deps/anaconda/condabin:/opt/cryosparc2/cryosparc2_worker/deps/anaconda/envs/cryosparc_worker_env/bin:/opt/cryosparc2/cryosparc2_worker/deps/anaconda/condabin:/home/spuser/bin:/home/spuser/.local/bin:/opt/cryosparc2/cryosparc2_master/bin:/data/cryosparc_user/software/cryosparc/cryosparc2_master/bin:/opt/cistem-1.0.0-beta:/opt/bin:/opt/sp/bin:/usr/lib64/openmpi/bin:/opt/motioncorr_v2.1/bin:/opt/frealign_v9.11/bin:/opt/bin:/usr/lib64/openmpi/bin:/usr/local/cuda/bin:/opt/IMOD/bin:/opt/relion-3.1-b/bin:/opt/cistem-1.0.0-beta:/opt/bin:/opt/sp/bin:/usr/lib64/openmpi/bin:/opt/motioncorr_v2.1/bin:/opt/frealign_v9.11/bin:/opt/bin:/usr/lib64/openmpi/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/local/cuda-8.0/bin:/snap/bin:/home/spuser/.dotnet/tools:/usr/local/cuda-8.0/bin
MAIL=/var/mail/spuser
MODULE_VERSION=3.2.10
MKL_NUM_THREADS=1
QT_QPA_PLATFORMTHEME=appmenu-qt5
IMOD_PLUGIN_DIR=/opt/IMOD/lib/imodplug
CONDA_PREFIX=/opt/cryosparc2/cryosparc2_worker/deps/anaconda/envs/cryosparc_worker_env
LC_IDENTIFICATION=de_DE.UTF-8
PWD=/opt/cryosparc2/cryosparc2_worker
CRYOSPARC_ROOT_DIR=/opt/cryosparc2/cryosparc2_worker
NUMEXPR_NUM_THREADS=1
_LMFILES_=/opt/sp/modulefiles/relion/3.1-b
RELION_RESMAP_EXECUTABLE=/opt/bin/ResMap
IMOD_JAVADIR=/usr/local/java
LANG=en_US.UTF-8
MODULEPATH=/opt/sp/modulefiles:/opt/sp/modulefiles:/etc/environment-modules/modules:/usr/share/modules/versions:/usr/Modules/$MODULE_VERSION/modulefiles:/usr/share/modules/modulefiles
LC_MEASUREMENT=de_DE.UTF-8
LOADEDMODULES=relion/3.1-b
FOR_DISABLE_STACK_TRACE=1
_CE_M=
RELION_CTFFIND_EXECUTABLE=/opt/ctffind-bin-4.1.5/bin/ctffind
HOME=/home/spuser
SHLVL=1
CRYOSPARC_PATH=/opt/cryosparc2/cryosparc2_worker/bin
RELION_SUMMOVIE_EXECUTABLE=/opt/bin/sum_movie_openmp_7_17_15.exe
PYTHONPATH=/opt/cryosparc2/cryosparc2_worker
CONDA_PYTHON_EXE=/opt/cryosparc2/cryosparc2_worker/deps/anaconda/bin/python
LOGNAME=spuser
SSH_CONNECTION= # redacted #
XDG_DATA_DIRS=/usr/local/share:/usr/share:/var/lib/snapd/desktop
MODULESHOME=/usr/share/modules
OMP_NUM_THREADS=1
CONDA_DEFAULT_ENV=cryosparc_worker_env
RELION_GCTF_EXECUTABLE=/opt/bin/Gctf
IMOD_CALIB_DIR=/usr/local/ImodCalib
LESSOPEN=| /usr/bin/lesspipe %s
RELION_PDFVIEWER_EXECUTABLEe=evince
DISPLAY=localhost:10.0
XDG_RUNTIME_DIR=/run/user/1001
LC_TIME=de_DE.UTF-8
LESSCLOSE=/usr/bin/lesspipe %s %s
CRYOSPARC_CUDA_PATH=/usr/local/cuda-11.5
LC_NAME=de_DE.UTF-8
BASH_FUNC_module%%=() { eval `/usr/bin/modulecmd bash $*`
}
cat /etc/ld.so.conf
include /etc/ld.so.conf.d/*.conf
ls /etc/ld.so.conf.d/
cuda-10-1.conf cuda-11-2.conf cuda-11-5.conf fakeroot-x86_64-linux-gnu.conf i386-linux-gnu.conf libc.conf x86_64-linux-gnu.conf x86_64-linux-gnu_EGL.conf x86_64-linux-gnu_GL.conf
cat /etc/ld.so.conf.d/*.conf
/usr/local/cuda-10.1/targets/x86_64-linux/lib
/usr/local/cuda-11.2/targets/x86_64-linux/lib
/usr/local/cuda-11.5/targets/x86_64-linux/lib
/usr/lib/x86_64-linux-gnu/libfakerootMultiarch support
/lib/i386-linux-gnu
/usr/lib/i386-linux-gnu
/lib/i686-linux-gnu
/usr/lib/i686-linux-gnulibc default configuration
/usr/local/lib
Multiarch support
/lib/x86_64-linux-gnu
/usr/lib/x86_64-linux-gnu
/usr/lib/x86_64-linux-gnu/mesa-egl
/usr/lib/x86_64-linux-gnu/mesa
Let me know if there is anything else that would be helpful, and thanks again for the support!
Cheers,
Fred