Hi wtempel,
Thanks for the fast response.
[CPU RAM used: 176 MB] Working in directory: /oak/stanford/groups/brunger/vATPase/SPA/SPA_SupRes/P3/J1729
[CPU RAM used: 176 MB] Running on lane brunger_sh03-14n15
[CPU RAM used: 176 MB] Resources allocated:
[CPU RAM used: 176 MB] Worker: brunger_sh03-14n15
[CPU RAM used: 176 MB] CPU : [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23]
[CPU RAM used: 176 MB] GPU : [0, 1, 2, 3]
[CPU RAM used: 176 MB] RAM : [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17]
[CPU RAM used: 176 MB] SSD : False
[CPU RAM used: 176 MB] --------------------------------------------------------------
[CPU RAM used: 176 MB] Importing job module for job type reference_motion_correction...
[CPU RAM used: 228 MB] Job ready to run
[CPU RAM used: 228 MB] ***************************************************************
[CPU RAM used: 228 MB] Random seed: 1602315488
[CPU RAM used: 228 MB] PID: 90661
[CPU RAM used: 318 MB] Scales of input particles in group 0 are all 1.0. Recommendation: re-run the upstream refinement job with 'Minimize over per-particle scale' turned on.
[CPU RAM used: 318 MB] Processing stages enabled:
[CPU RAM used: 318 MB] [X] Optimize hyperparameters
[CPU RAM used: 318 MB] [X] Compute empirical dose weights
[CPU RAM used: 318 MB] [X] Motion-correct particles
Mask for volume 0
FSC for volume 0
[CPU RAM used: 517 MB] Resolution cutoffs: alignment 5.596 A, cross-validation 3.957 A
[CPU RAM used: 2086 MB] Removed 9006 movies with fewer than 2 particles.
[CPU RAM used: 2111 MB] Removed 3295 particles (in micrographs with fewer than 2 total particles).
[CPU RAM used: 2136 MB] --------------------------------------------------------------
STARTING: OPTIMIZE HYPERPARAMETERS
--------------------------------------------------------------
[CPU RAM used: 2137 MB] Working with 2777 movies containing 12501 particles
[CPU RAM used: 2137 MB] Computing intended data cache configuration
[CPU RAM used: 188 MB] ====== Job process terminated abnormally.