Dear cryosparc team,
I am using local refinement to get focused 3D-refined maps and obtain apparently correct maps and sharpened maps. However, when I download the half maps, they look like if they were empty. The slices look fine during the process. I am not sure if this is how they should look but they look different after other local refinements I have performed previously.
Below you have an image of one of this half maps opened in ChimeraX. There is a faint signal of the map.
Do you have any idea of what could be happening and how to solve it?
Thank you!