From v3 to v4.4.1.: Recalculate the size of all jobs in a project

Data Management
4

@AndreGraca
Thanks for your patience while we were working on a response (and the code).
The update_all_job_sizes() was not intended to be manually run, but it may be help in your specific case.
You will want to ensure

  1. The current CryoSPARC version. At the time of writing, this is v4.4.1 with patch 240110 for v4.4.1 applied. The 240110 includes an update of the update_all_job_sizes() function and requires a CryoSPARC restart after patching.
  2. Confirm with reference to the command_core log
    cryosparcm log command_core | grep -e "update_all_job_sizes + \| Finished updating all"
    that the automatic run of update_all_job_sizes at the CryoSPARC startup is complete, based on the timestamp. Look for a log entry like
    2024-01-11 22:52:29,322 update_all_job_sizes_run INFO     | Finished updating all job sizes (0 jobs updated, 0 projects updated)
    that is newer than the latest CryoSPARC restart.
  3. Open a terminal for monitoring the command_core log, in which you run
    cryosparcm log command_core
    whose output should automatically be updated as new command_core log entries are recorded.
  4. In another terminal, run
    cryosparcm cli "update_all_job_sizes()"
    This command should immediately “go into the background”, but may take a long time to run.
  5. Monitor, in the former terminal window, the progress and completion of the command you entered in the latter terminal window.

[Edited (again) 2024-01-11]