Hi @nis_it,
Actually, the path you mentioned seems to be the path to the CTFFIND4 binary from a previous version of cryoSPARC (before the update to our dependency manager). Is it possible that an update to your cryosparc2_worker instance somehow failed mid way?
The correct path should be:
sarulthasan@cryoem5:/u/cryosparcprod/production_cryosparc/cryosparc2_worker/deps/external/ctffind-4.1.10/bin$ ll
total 31736
drwxrwxr-x 2 cryosparcprod cryosparcprod 4 Oct 12 16:34 ./
drwxrwxr-x 3 cryosparcprod cryosparcprod 3 Oct 12 16:34 ../
-rwxr-xr-x 1 cryosparcprod cryosparcprod 31545286 Oct 12 16:34 ctffind*
-rwxr-xr-x 1 cryosparcprod cryosparcprod 4963 Oct 12 16:34 ctffind_plot_results.sh*
You can copy the binaries into this directory and it should work again.
I’m currently working on a feature that will allow a user to selectively reinstall dependencies, so until that is released, you might have issues with GCTF as well. A dirty method of fixing this issue is to delete your cryosparc2_worker directory and reinstall it using the “Installation: Standalone Worker” documentation here.