I applied the patch and tried re-running the job. It failed again, but this time I got a different error:
Traceback (most recent call last):
File “cryosparc_master/cryosparc_compute/run.py”, line 129, in cryosparc_master.cryosparc_compute.run.main
File “cryosparc_master/cryosparc_compute/jobs/abinit/run.py”, line 247, in cryosparc_master.cryosparc_compute.jobs.abinit.run.run_homo_abinit
File “/spshared/apps/cryosparc4/cryosparc_worker/cryosparc_compute/sigproc.py”, line 471, in align_density
assert n.all(n.isfinite(mu))
AssertionError
I saw there is a different older thread here about this error: AssertionError of running Ab-Initio Reconstruction
Any ideas? Thanks!