Rerun Motion Correction On a Few Micrographs

Can one rerun a Full Frame Motion Correction job on only those micrographs which did not finish.

Sometimes people on our cluster start a job before checking whether or not the gpus are being used, this then crashes the motion correction on those micrographs. When reaching the end I have then 3156 completed micrographs of 3162 and the job never finishes.

Is it possible to re-run motion correction on the missing micrographs? Even just excluding them would be fine?

Thanks for any help :slight_smile:

Hi @mturk,

If you run the command cryosparcm cli "set_job_status(project_uid = '<PXX>', job_uid = '<JXX>', status = 'completed')" on the command line, it should change the job’s status from ‘failed’ to ‘completed’ , which will allow you to use the outputs of the job that failed (up to the last 50). Let me know how it goes.