Problem with reinstallation of cryospark

Hello there,

I was reinstalling cryosparc and also tried to install it as a superuser but it failed. I cleaned the directories and wanted to install it freshly but each time I want to set up a bulk directory it says:

[dawid@comp1 ~]$ cryosparc configure bulk list

Bulk directory contents:

ls: cannot access run/bulk: No such file or directory
Traceback (most recent call last):
File “/home/dawid/cryosparc/bin/”, line 181, in
res = subprocess.check_output([“ls”, “-l”, “run/bulk”])
File “/usr/lib64/python2.7/”, line 575, in check_output
raise CalledProcessError(retcode, cmd, output=output)
subprocess.CalledProcessError: Command ‘[‘ls’, ‘-l’, ‘run/bulk’]’ returned non-zero exit status 2

It looks like it cannot find the directory /run/bulk which is in the cryospark installation folder in my home directory. I would be grateful for some help with it.


Error fixed - never do the install as root or remember to remove all files from root directories. Problem was that in /usr/bin there was still a copy of which was read as the main one. After removal of files everything is fine.