Patch motion correction can't be marked as complete

Motion Correction
1

Hi all,
While running a patch motion correction job several of the movies couldn’t be corrected and I got the following error message for those who failed:

[CPU: 373.8 MB]  Error occurred while processing J135/imported/004008064492272322255_FoilHole_16558000_Data_16546128_16546130_20191218_0423_fractions.tiff
Traceback (most recent call last):
  File "/data1/relionuse/cryosparc/cryosparc2_worker/cryosparc_compute/jobs/pipeline.py", line 59, in exec
    return self.process(item)
  File "cryosparc_worker/cryosparc_compute/jobs/motioncorrection/run_patch.py", line 231, in cryosparc_compute.jobs.motioncorrection.run_patch.run_patch_motion_correction_multi.motionworker.process
  File "/data1/relionuse/cryosparc/cryosparc2_worker/cryosparc_compute/blobio/mrc.py", line 194, in write_mrc
    with open(fname, 'wb') as file_obj:
OSError: [Errno 28] No space left on device: '/data1/relionuse/cryosparc/Projects/Natalia/Cryosparc16Dec/P12/J136/motioncorrected/004008064492272322255_FoilHole_16558000_Data_16546128_16546130_20191218_0423_fractions_patch_aligned.mrc'

Marking J135/imported/004008064492272322255_FoilHole_16558000_Data_16546128_16546130_20191218_0423_fractions.tiff as incomplete and continuing...

I check my disk status and I still have plenty of space. Also, after one movie failed, the job moved to the next few movies which were corrected successfully.

I tried to mark this job as complete so I could move on to CTF estimation with the movies that were corrected, a notification appear at the top of the screen saying “Output checking and job completion started” but nothing the job remains as “failed”.

Thanks,

Donna

2

@matzovd Please can you post (after removal of confidential information, if applicable) the following diagnostic info:

  1. the last “page” of output in the “Overview” tab of Job 136
  2. “core log” (redirected to file. Depending of file size, you may trim the file above the first occurrence of Request to export P12 J136):
    cryosparcm log command_core > path-to-core-output
  3. cryosparcm joblog P12 J136 > path-to-J136-output