While running a patch motion correction job several of the movies couldn’t be corrected and I got the following error message for those who failed:
[CPU: 373.8 MB] Error occurred while processing J135/imported/004008064492272322255_FoilHole_16558000_Data_16546128_16546130_20191218_0423_fractions.tiff Traceback (most recent call last): File "/data1/relionuse/cryosparc/cryosparc2_worker/cryosparc_compute/jobs/pipeline.py", line 59, in exec return self.process(item) File "cryosparc_worker/cryosparc_compute/jobs/motioncorrection/run_patch.py", line 231, in cryosparc_compute.jobs.motioncorrection.run_patch.run_patch_motion_correction_multi.motionworker.process File "/data1/relionuse/cryosparc/cryosparc2_worker/cryosparc_compute/blobio/mrc.py", line 194, in write_mrc with open(fname, 'wb') as file_obj: OSError: [Errno 28] No space left on device: '/data1/relionuse/cryosparc/Projects/Natalia/Cryosparc16Dec/P12/J136/motioncorrected/004008064492272322255_FoilHole_16558000_Data_16546128_16546130_20191218_0423_fractions_patch_aligned.mrc' Marking J135/imported/004008064492272322255_FoilHole_16558000_Data_16546128_16546130_20191218_0423_fractions.tiff as incomplete and continuing...
I check my disk status and I still have plenty of space. Also, after one movie failed, the job moved to the next few movies which were corrected successfully.
I tried to mark this job as complete so I could move on to CTF estimation with the movies that were corrected, a notification appear at the top of the screen saying “Output checking and job completion started” but nothing the job remains as “failed”.