FSC raw data for independent plotting

issue_recorded
1007

#1

Hi, perhaps this is a naive question but where can I find the actual raw data for FSC and GSFCS curves calculated from Refinement and NU-Refinement? I would like to extract them and plot them independently.

Many thanks in advance,

Edoardo


#2

Hi Edoardo,

The raw data is in the link labeled txt, above the plot.

Cheers
Oli


#3

Hi Oliver,

Thanks a lot :slight_smile: as always happens the solution is just standing in front of us.

Cheers,

Edo


#4

Sorry to dredge from the archives but do you know how to do this from the LocalRes GSFSC plots? The same .txt link isn’t present in my panel.

I can open a new thread if that’s the correct way to do this (pretty new here).

Cheers,
Ben


#5

Hi @bpp,

What version of cryoSPARC are you running?

- Suhail


#6

Hi I’m on v 2.12.4 - should I upgrade to get this feature?

Thanks,
Ben


#7

Hi @bpp,

Sorry I missed the fact that you were running a local resolution estimation job. We just added raw FSC value data to the following job’s outputs, they will be available in the next release:

  • Local Resolution Estimation
  • Align 3D Maps
  • Local CTF Refinement
  • Global CTF Refinement
  • Heterogeneous Refinement
  • Particle Subtraction

Regards,
Suhail


#8

Ah ok great - thanks!

B