Clarity on "Force re-do GS split" after RELION 3D Classification

Resplit used to be the default option until relatively recently. If you lowpass filter your input map appropriately, there should be no problem. The only very important exception that I know of is refinement after particle polishing. You should never resplit your particle set after polishing, because after per particle motion correction each half set is biased to its respective half map.

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